Could you be more specific. If you are talking about classes and characteristics then this could be achieved by integration models. Also check below link which contains certain links.
Logically the object dependencies are transferred with CIF itself that is in product master the class/characteristics plus same way in PDS to APO considering classes and characteristics have been shifted already (or created manually).
Anyways the objects dependencies are supported in DP for forecasting & in PPDS for planning but not supported by CTM, heuristics & optimizer.
So not sure what exactly you are trying to achieve by CIFing these tables. Also check SAP note 1306779 where it clearly states below:
1.4. Variant tables are not transferred to APO. They must be manually created and maintained in APO (transaction CU61/CU62/CU63). Alternatively, they can also be transferred using Application Link Enabling (ALE) or IDocs.
Logically you are using ALE so there should not be any concern, but if you see it other way then can do with CU61.
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