To "configure" FPM, run application CONFIGURE_COMPONENT. To "customize" FPM, run application CUSTOMIZE_COMPONENT. You can execute these applications directly from transaction SE80.
FPM configurations are actually workbench objects so you will need to attach them to a workbench transport request and they are client-independent. FPM customizations are just that: customizations. So, they are attached to a customization transport request and are client-dependent.
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