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Netweaver java program is not able to update the record checked out

There are many users working on MDM Data manager and they do modify the records in a workflow.

As there are many users working on the set of product records, exclusive lock on the record is required when workflow is triggered.

After the modifications are complete they trigger the java program to calculate few product measures based on modifications.

Java program will update the results back into the product record.

Java program is not able to update the record as the record is checked out by workflow.

Does any one can suggest me on how to execute database update from java program when the coresponding record is checked out by workflow?

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